PGAT Screenshots

Genome List

Displays table of genomes included in the tool, providing details such as genome size, GC content, and counts of CDS, pseudogenes, tRNA, rRNA and IS elements. Users can select a subset of genomes to include when using comparative analysis features.

Synteny Analysis

Visualization of synteny between genomes surrounding a selected gene.

Pathway Analysis

Utilizing KEGG Pathway diagrams, PGAT helps identify potential genes that may be missing from various metabolic pathways in different bacterial strains.

Ortholog Tables

Users can also use gene search results to generate ortholog lists for selected genomes or determine the presence and absence of genes among specific genomes.

© University of Washington 2016